J4_9RHU_011

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9RHU|1|A3|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|2461
9RHU|1|A3|G|2462
*
9RHU|1|A3|U|2480
9RHU|1|A3|G|2481
9RHU|1|A3|U|2482
9RHU|1|A3|G|2483
9RHU|1|A3|A|2484
9RHU|1|A3|A|2485
*
9RHU|1|A3|U|2535
9RHU|1|A3|G|2536
9RHU|1|A3|G|2537
9RHU|1|A3|A|2538
9RHU|1|A3|A|2539
9RHU|1|A3|A|2540
9RHU|1|A3|G|2541
*
9RHU|1|A3|U|2561
9RHU|1|A3|C|2562

Current chains

Chain A3

28S rRNA

Nearby chains

Chain MB

60S ribosomal protein L34

Chain N2

Ribosomal protein L19

Chain Q2

60S ribosomal protein L22

Chain g2

60S ribosomal protein L38