J4_9RHU_017
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9RHU|1|J1|U|8, 9RHU|1|J1|U|47, 9RHU|1|J1|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RHU_017 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1675
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9RHU|1|J1|A|7
9RHU|1|J1|U|8
9RHU|1|J1|A|9
9RHU|1|J1|G|10
*
9RHU|1|J1|C|25
9RHU|1|J1|A|26
9RHU|1|J1|U|27
*
9RHU|1|J1|A|43
9RHU|1|J1|G|44
9RHU|1|J1|G|45
9RHU|1|J1|G|46
9RHU|1|J1|U|47
9RHU|1|J1|C|48
9RHU|1|J1|C|49
*
9RHU|1|J1|G|65
9RHU|1|J1|U|66
Current chains
- Chain J1
- E-site tRNA-Pro
Nearby chains
- Chain M1
- 40S ribosomal protein S3a
- Chain Q1
- Small ribosomal subunit protein uS7
- Chain Z1
- Small ribosomal subunit protein uS11
- Chain j2
- Ribosomal protein L36a
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