J4_9RJA_002

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9RJA|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|A|G|142
9RJA|1|A|A|143
9RJA|1|A|G|144
*
9RJA|1|A|C|178
9RJA|1|A|A|179
9RJA|1|A|U|180
9RJA|1|A|A|181
9RJA|1|A|A|182
9RJA|1|A|C|183
9RJA|1|A|G|184
*
9RJA|1|A|C|193
9RJA|1|A|C|194
9RJA|1|A|A|195
9RJA|1|A|A|196
9RJA|1|A|A|197
9RJA|1|A|G|198
*
9RJA|1|A|U|219
9RJA|1|A|G|220
9RJA|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20