J4_9RJA_006

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9RJA|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RJA_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2811

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9RJA|1|a|C|268
9RJA|1|a|C|269
*
9RJA|1|a|G|370
9RJA|1|a|A|371
9RJA|1|a|G|372
9RJA|1|a|U|373
9RJA|1|a|A|374
9RJA|1|a|G|375
*
9RJA|1|a|U|399
9RJA|1|a|G|400
9RJA|1|a|A|401
9RJA|1|a|A|402
9RJA|1|a|U|403
9RJA|1|a|A|404
9RJA|1|a|U|405
9RJA|1|a|G|406
*
9RJA|1|a|C|421
9RJA|1|a|A|422
9RJA|1|a|A|423
9RJA|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28