J4_9RJA_008

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9RJA|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|a|C|601
9RJA|1|a|A|602
9RJA|1|a|A|603
9RJA|1|a|G|604
*
9RJA|1|a|C|624
9RJA|1|a|G|625
9RJA|1|a|A|626
9RJA|1|a|A|627
9RJA|1|a|G|628
*
9RJA|1|a|C|635
9RJA|1|a|G|636
9RJA|1|a|A|637
9RJA|1|a|G|638
*
9RJA|1|a|C|650
9RJA|1|a|G|651
9RJA|1|a|U|652
9RJA|1|a|U|653
9RJA|1|a|A|654
9RJA|1|a|A|655
9RJA|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15