J4_9RPV_024

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|3634
9RPV|1|M5|A|3635
9RPV|1|M5|C|3636
9RPV|1|M5|PSU|3637
9RPV|1|M5|G|3638
*
9RPV|1|M5|C|3650
9RPV|1|M5|A|3651
9RPV|1|M5|A|3652
9RPV|1|M5|A|3653
9RPV|1|M5|G|3654
*
9RPV|1|M5|U|3690
9RPV|1|M5|G|3691
9RPV|1|M5|A|3692
9RPV|1|M5|U|3693
9RPV|1|M5|U|3694
*
9RPV|1|M5|A|3821
9RPV|1|M5|U|3822
9RPV|1|M5|G|3823
9RPV|1|M5|A|3824
9RPV|1|M5|A2M|3825
9RPV|1|M5|C|3826

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MA

Large ribosomal subunit protein uL2

Chain Mn

60S ribosomal protein L41

Chain Mp

60S ribosomal protein L37a

Chain S3

Small subunit ribosomal RNA; SSU rRNA