J4_9RPV_028

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

9RPV|1|M5|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RPV_028 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0657

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9RPV|1|M5|G|4587
9RPV|1|M5|U|4588
9RPV|1|M5|A|4589
9RPV|1|M5|A2M|4590
*
9RPV|1|M5|OMU|4620
9RPV|1|M5|C|4621
*
9RPV|1|M5|G|4676
9RPV|1|M5|U|4677
9RPV|1|M5|G|4678
*
9RPV|1|M5|C|4712
9RPV|1|M5|G|4713
9RPV|1|M5|C|4714
9RPV|1|M5|C|4715

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MO

60S ribosomal protein L13a

Chain MV

60S ribosomal protein L23