J4_9RPV_031
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9RPV|1|S3|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RPV_031 not in the Motif Atlas
- Homologous match to J4_9H3G_013
- Geometric discrepancy: 0.0924
- The information below is about J4_9H3G_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.5
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RPV|1|S3|C|98
9RPV|1|S3|A2M|99
9RPV|1|S3|U|100
9RPV|1|S3|U|101
9RPV|1|S3|A|102
9RPV|1|S3|A|103
9RPV|1|S3|A|104
9RPV|1|S3|PSU|105
9RPV|1|S3|C|106
*
9RPV|1|S3|G|355
9RPV|1|S3|C|356
9RPV|1|S3|C|357
*
9RPV|1|S3|G|405
9RPV|1|S3|PSU|406
9RPV|1|S3|G|407
9RPV|1|S3|A|408
9RPV|1|S3|C|409
*
9RPV|1|S3|G|431
9RPV|1|S3|G|432
Current chains
- Chain S3
- 18S rRNA of the stalled 80S
Nearby chains
- Chain RE
- Small ribosomal subunit protein eS4, X isoform
- Chain RI
- 40S ribosomal protein S8
- Chain RL
- 40S ribosomal protein S11
- Chain RX
- 40S ribosomal protein S23
Coloring options: