J4_9RTV_001

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9RTV|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RTV_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2974

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9RTV|1|A|C|268
9RTV|1|A|C|269
*
9RTV|1|A|G|370
9RTV|1|A|A|371
9RTV|1|A|G|372
9RTV|1|A|U|373
9RTV|1|A|A|374
9RTV|1|A|G|375
*
9RTV|1|A|U|399
9RTV|1|A|G|400
9RTV|1|A|A|401
9RTV|1|A|A|402
9RTV|1|A|U|403
9RTV|1|A|A|404
9RTV|1|A|U|405
9RTV|1|A|G|406
*
9RTV|1|A|C|421
9RTV|1|A|A|422
9RTV|1|A|A|423
9RTV|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28