J4_9RTV_005

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9RTV|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RTV_005 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.238

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9RTV|1|A|U|1313
9RTV|1|A|C|1314
*
9RTV|1|A|G|1338
9RTV|1|A|G|1339
9RTV|1|A|U|1340
9RTV|1|A|G|1341
9RTV|1|A|A|1342
9RTV|1|A|G|1343
*
9RTV|1|A|C|1404
9RTV|1|A|U|1405
*
9RTV|1|A|A|1597
9RTV|1|A|A|1598
9RTV|1|A|U|1599
9RTV|1|A|C|1600
9RTV|1|A|G|1601
9RTV|1|A|U|1602
9RTV|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23