J4_9RTV_007

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RTV_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.079

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9RTV|1|A|A|1772
9RTV|1|A|A|1773
9RTV|1|A|C|1774
9RTV|1|A|U|1775
9RTV|1|A|G|1776
*
9RTV|1|A|C|1788
9RTV|1|A|A|1789
9RTV|1|A|C|1790
9RTV|1|A|A|1791
9RTV|1|A|G|1792
*
9RTV|1|A|U|1827
9RTV|1|A|G|1828
9RTV|1|A|A|1829
9RTV|1|A|C|1830
*
9RTV|1|A|G|1975
9RTV|1|A|U|1976
9RTV|1|A|A|1977
9RTV|1|A|A|1978
9RTV|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2