J4_9RTV_011

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9RTV|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RTV_011 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5929

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9RTV|1|a|G|115
9RTV|1|a|A|116
9RTV|1|a|G|117
9RTV|1|a|U|118
9RTV|1|a|A|119
9RTV|1|a|A|120
9RTV|1|a|U|121
9RTV|1|a|G|122
*
9RTV|1|a|U|239
9RTV|1|a|G|240
*
9RTV|1|a|C|286
9RTV|1|a|U|287
9RTV|1|a|A|288
9RTV|1|a|G|289
*
9RTV|1|a|C|311
9RTV|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17