J4_9RU7_001

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9RU7|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|C|111
9RU7|1|L5|C|112
*
9RU7|1|L5|G|278
9RU7|1|L5|A|279
9RU7|1|L5|G|280
9RU7|1|L5|U|281
9RU7|1|L5|C|282
9RU7|1|L5|G|283
*
9RU7|1|L5|C|304
9RU7|1|L5|A|305
9RU7|1|L5|A|306
9RU7|1|L5|A|307
9RU7|1|L5|G|308
9RU7|1|L5|C|309
9RU7|1|L5|G|310
*
9RU7|1|L5|U|327
9RU7|1|L5|A|328
9RU7|1|L5|A|329
9RU7|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36