J4_9RU9_010

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9RU9|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|C|3696
9RU9|1|L5|U|3697
9RU9|1|L5|G|3698
*
9RU9|1|L5|C|3752
9RU9|1|L5|G|3753
*
9RU9|1|L5|C|3771
9RU9|1|L5|U|3772
9RU9|1|L5|U|3773
9RU9|1|L5|A|3774
9RU9|1|L5|A|3775
9RU9|1|L5|G|3776
9RU9|1|L5|G|3777
9RU9|1|L5|U|3778
9RU9|1|L5|A|3779
9RU9|1|L5|G|3780
*
9RU9|1|L5|U|3814
9RU9|1|L5|G|3815
9RU9|1|L5|A|3816
9RU9|1|L5|A|3817
9RU9|1|L5|UY1|3818
9RU9|1|L5|G|3819

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA