J4_9RUC_010

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9RUC|1|S2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|S2|C|98
9RUC|1|S2|A|99
9RUC|1|S2|U|100
9RUC|1|S2|U|101
9RUC|1|S2|A|102
9RUC|1|S2|A|103
9RUC|1|S2|A|104
9RUC|1|S2|U|105
9RUC|1|S2|C|106
*
9RUC|1|S2|G|355
9RUC|1|S2|C|356
9RUC|1|S2|C|357
*
9RUC|1|S2|G|405
9RUC|1|S2|U|406
9RUC|1|S2|G|407
9RUC|1|S2|A|408
9RUC|1|S2|C|409
*
9RUC|1|S2|G|431
9RUC|1|S2|G|432

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

Small ribosomal subunit protein uS17

Chain SX

40S ribosomal protein S23