J4_9RVC_002

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAGAC*GUCAC

Length

26 nucleotides

Bulged bases

9RVC|1|A|U|183, 9RVC|1|A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RVC|1|A|G|142
9RVC|1|A|A|143
9RVC|1|A|C|144
*
9RVC|1|A|G|178
9RVC|1|A|A|179
9RVC|1|A|U|180
9RVC|1|A|A|181
9RVC|1|A|A|182
9RVC|1|A|U|183
9RVC|1|A|A|184
9RVC|1|A|U|185
*
9RVC|1|A|A|206
9RVC|1|A|G|207
9RVC|1|A|U|208
9RVC|1|A|G|209
9RVC|1|A|A|210
9RVC|1|A|A|211
9RVC|1|A|A|212
9RVC|1|A|G|213
9RVC|1|A|A|214
9RVC|1|A|C|215
*
9RVC|1|A|G|225
9RVC|1|A|U|226
9RVC|1|A|C|227
9RVC|1|A|A|228
9RVC|1|A|C|229

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20