J4_9RVC_004
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAG*CAG*UUGGCCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 9RVC|1|Y|U|8, 9RVC|1|Y|C|47, 9RVC|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_004 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.1684
- The information below is about J4_6UFM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9RVC|1|Y|U|7
9RVC|1|Y|U|8
9RVC|1|Y|A|9
9RVC|1|Y|G|10
*
9RVC|1|Y|C|25
9RVC|1|Y|A|26
9RVC|1|Y|G|27
*
9RVC|1|Y|U|43
9RVC|1|Y|U|44
9RVC|1|Y|G|45
9RVC|1|Y|G|46
9RVC|1|Y|C|47
9RVC|1|Y|C|48
9RVC|1|Y|G|49
*
9RVC|1|Y|C|65
9RVC|1|Y|A|66
Current chains
- Chain Y
- A-site tRNA-Lys
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: