J4_9RVC_010

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9RVC|1|a|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RVC_010 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1305

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9RVC|1|a|G|1347
9RVC|1|a|U|1348
9RVC|1|a|U|1349
9RVC|1|a|U|1350
9RVC|1|a|C|1351
*
9RVC|1|a|G|1375
9RVC|1|a|G|1376
9RVC|1|a|U|1377
9RVC|1|a|U|1378
9RVC|1|a|A|1379
9RVC|1|a|G|1380
*
9RVC|1|a|C|1441
9RVC|1|a|C|1442
*
9RVC|1|a|G|1641
9RVC|1|a|C|1642
9RVC|1|a|C|1643
9RVC|1|a|C|1644
9RVC|1|a|G|1645
9RVC|1|a|U|1646
9RVC|1|a|A|1647
9RVC|1|a|C|1648

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23