J4_9RVC_014
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 9RVC|1|a|A|1998
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_014 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.0885
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|a|C|1860
9RVC|1|a|U|1861
9RVC|1|a|G|1862
*
9RVC|1|a|C|1932
9RVC|1|a|G|1933
*
9RVC|1|a|C|1951
9RVC|1|a|C|1952
9RVC|1|a|U|1953
9RVC|1|a|A|1954
9RVC|1|a|A|1955
9RVC|1|a|G|1956
9RVC|1|a|G|1957
9RVC|1|a|U|1958
9RVC|1|a|A|1959
9RVC|1|a|G|1960
*
9RVC|1|a|C|1994
9RVC|1|a|G|1995
9RVC|1|a|A|1996
9RVC|1|a|A|1997
9RVC|1|a|A|1998
9RVC|1|a|G|1999
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: