J4_9S3B_005

3D structure

PDB id

9S3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9S3B|1|L5|A|2366, 9S3B|1|L5|U|2369, 9S3B|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3B|1|L5|C|2365
9S3B|1|L5|A|2366
9S3B|1|L5|A|2367
9S3B|1|L5|A|2368
9S3B|1|L5|U|2369
9S3B|1|L5|A|2370
9S3B|1|L5|U|2371
*
9S3B|1|L5|A|2389
9S3B|1|L5|G|2390
9S3B|1|L5|G|2391
*
9S3B|1|L5|C|2824
9S3B|1|L5|A|2825
9S3B|1|L5|U|2826
9S3B|1|L5|G|2827
9S3B|1|L5|U|2828
9S3B|1|L5|U|2829
*
9S3B|1|L5|A|3856
9S3B|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31

Chain NB

Isoform 2 of Transcription factor BTF3