J4_9S3B_010

3D structure

PDB id

9S3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9S3B|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3B|1|L5|C|3696
9S3B|1|L5|U|3697
9S3B|1|L5|G|3698
*
9S3B|1|L5|C|3752
9S3B|1|L5|G|3753
*
9S3B|1|L5|C|3771
9S3B|1|L5|U|3772
9S3B|1|L5|U|3773
9S3B|1|L5|A|3774
9S3B|1|L5|A|3775
9S3B|1|L5|G|3776
9S3B|1|L5|G|3777
9S3B|1|L5|U|3778
9S3B|1|L5|A|3779
9S3B|1|L5|G|3780
*
9S3B|1|L5|U|3814
9S3B|1|L5|G|3815
9S3B|1|L5|A|3816
9S3B|1|L5|A|3817
9S3B|1|L5|U|3818
9S3B|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA