J4_9S3C_012

3D structure

PDB id

9S3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

9S3C|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9S3C_012 not in the Motif Atlas

Homologous match to J4_9H3G_010

Geometric discrepancy: 0.1506

The information below is about J4_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.4

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9S3C|1|L5|C|4231
9S3C|1|L5|U|4232
9S3C|1|L5|A|4233
9S3C|1|L5|A|4234
9S3C|1|L5|G|4235
*
9S3C|1|L5|U|4289
9S3C|1|L5|U|4290
9S3C|1|L5|G|4291
9S3C|1|L5|A|4292
9S3C|1|L5|U|4293
*
9S3C|1|L5|A|4317
9S3C|1|L5|C|4318
9S3C|1|L5|C|4319
*
9S3C|1|L5|G|4328
9S3C|1|L5|G|4329
9S3C|1|L5|G|4330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a