J4_9S7E_008
3D structure
- PDB id
- 9S7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9S7E|1|AA|A|295, 9S7E|1|AA|A|456, 9S7E|1|AA|C|459, 9S7E|1|AA|C|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9S7E_008 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.2575
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9S7E|1|AA|G|294
9S7E|1|AA|A|295
9S7E|1|AA|G|296
*
9S7E|1|AA|C|405
9S7E|1|AA|A|406
9S7E|1|AA|A|407
9S7E|1|AA|U|408
9S7E|1|AA|A|409
9S7E|1|AA|G|410
*
9S7E|1|AA|C|451
9S7E|1|AA|C|452
9S7E|1|AA|C|453
9S7E|1|AA|U|454
9S7E|1|AA|A|455
9S7E|1|AA|A|456
9S7E|1|AA|A|457
9S7E|1|AA|C|458
9S7E|1|AA|C|459
9S7E|1|AA|U|460
9S7E|1|AA|C|461
9S7E|1|AA|A|462
*
9S7E|1|AA|U|485
9S7E|1|AA|C|486
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A2
- Small ribosomal subunit protein mS37
- Chain A3
- Small ribosomal subunit protein bS22, mitochondrial
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain AL
- Small ribosomal subunit protein uS15m
- Chain AN
- Small ribosomal subunit protein uS17m
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain AT
- Small ribosomal subunit protein mS25
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