J4_9SLG_001

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9SLG|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SLG_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5594

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9SLG|1|A|G|115
9SLG|1|A|A|116
9SLG|1|A|G|117
9SLG|1|A|U|118
9SLG|1|A|A|119
9SLG|1|A|A|120
9SLG|1|A|U|121
9SLG|1|A|G|122
*
9SLG|1|A|U|239
9SLG|1|A|G|240
*
9SLG|1|A|C|286
9SLG|1|A|U|287
9SLG|1|A|A|288
9SLG|1|A|G|289
*
9SLG|1|A|C|311
9SLG|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17