J4_9SLG_002

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9SLG|1|A|C|183, 9SLG|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|A|G|142
9SLG|1|A|A|143
9SLG|1|A|G|144
*
9SLG|1|A|C|178
9SLG|1|A|A|179
9SLG|1|A|U|180
9SLG|1|A|A|181
9SLG|1|A|A|182
9SLG|1|A|C|183
9SLG|1|A|G|184
*
9SLG|1|A|C|193
9SLG|1|A|C|194
9SLG|1|A|A|195
9SLG|1|A|A|196
9SLG|1|A|A|197
9SLG|1|A|G|198
*
9SLG|1|A|U|219
9SLG|1|A|G|220
9SLG|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20