J4_9SLG_005

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SLG_005 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1066

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|G|297
9SLG|1|a|G|298
9SLG|1|a|A|299
9SLG|1|a|A|300
9SLG|1|a|G|301
*
9SLG|1|a|C|316
9SLG|1|a|G|317
9SLG|1|a|C|318
9SLG|1|a|G|319
*
9SLG|1|a|C|323
9SLG|1|a|A|324
9SLG|1|a|G|325
*
9SLG|1|a|C|337
9SLG|1|a|G|338
9SLG|1|a|U|339
9SLG|1|a|A|340
9SLG|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24