J4_9SLG_006

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9SLG|1|a|A|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|a|C|603
9SLG|1|a|A|604
9SLG|1|a|A|605
9SLG|1|a|G|606
*
9SLG|1|a|C|626
9SLG|1|a|G|627
9SLG|1|a|A|628
9SLG|1|a|A|629
9SLG|1|a|G|630
*
9SLG|1|a|C|637
9SLG|1|a|G|638
9SLG|1|a|A|639
9SLG|1|a|G|640
*
9SLG|1|a|C|652
9SLG|1|a|G|653
9SLG|1|a|U|654
9SLG|1|a|U|655
9SLG|1|a|A|656
9SLG|1|a|A|657
9SLG|1|a|G|658

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15