J4_9SLG_009
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9SLG|1|a|G|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SLG_009 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.2511
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9SLG|1|a|U|1315
9SLG|1|a|C|1316
*
9SLG|1|a|G|1340
9SLG|1|a|G|1341
9SLG|1|a|U|1342
9SLG|1|a|G|1343
9SLG|1|a|A|1344
9SLG|1|a|G|1345
*
9SLG|1|a|C|1406
9SLG|1|a|U|1407
*
9SLG|1|a|A|1599
9SLG|1|a|A|1600
9SLG|1|a|U|1601
9SLG|1|a|C|1602
9SLG|1|a|G|1603
9SLG|1|a|U|1604
9SLG|1|a|A|1605
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: