J4_9SLG_011
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SLG_011 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.0755
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SLG|1|a|A|1774
9SLG|1|a|A|1775
9SLG|1|a|C|1776
9SLG|1|a|U|1777
9SLG|1|a|G|1778
*
9SLG|1|a|C|1790
9SLG|1|a|A|1791
9SLG|1|a|C|1792
9SLG|1|a|A|1793
9SLG|1|a|G|1794
*
9SLG|1|a|U|1829
9SLG|1|a|G|1830
9SLG|1|a|A|1831
9SLG|1|a|C|1832
*
9SLG|1|a|G|1979
9SLG|1|a|U|1980
9SLG|1|a|A|1981
9SLG|1|a|A|1982
9SLG|1|a|U|1983
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: