J4_9SLG_014
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SLG_014 not in the Motif Atlas
- Homologous match to J4_8B0X_014
- Geometric discrepancy: 0.061
- The information below is about J4_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SLG|1|a|G|2647
9SLG|1|a|G|2648
9SLG|1|a|G|2649
9SLG|1|a|C|2650
*
9SLG|1|a|G|2678
9SLG|1|a|A|2679
9SLG|1|a|C|2680
*
9SLG|1|a|G|2735
9SLG|1|a|G|2736
9SLG|1|a|A|2737
9SLG|1|a|A|2738
9SLG|1|a|G|2739
*
9SLG|1|a|U|2773
9SLG|1|a|G|2774
9SLG|1|a|C|2775
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: