J4_9SPF_005
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9SPF|1|L5|A|2366, 9SPF|1|L5|U|2369, 9SPF|1|L5|U|2828
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|OMC|2365
9SPF|1|L5|A|2366
9SPF|1|L5|A|2367
9SPF|1|L5|A|2368
9SPF|1|L5|U|2369
9SPF|1|L5|A|2370
9SPF|1|L5|U|2371
*
9SPF|1|L5|A|2389
9SPF|1|L5|G|2390
9SPF|1|L5|G|2391
*
9SPF|1|L5|OMC|2824
9SPF|1|L5|A|2825
9SPF|1|L5|U|2826
9SPF|1|L5|G|2827
9SPF|1|L5|U|2828
9SPF|1|L5|U|2829
*
9SPF|1|L5|A|3856
9SPF|1|L5|G|3857
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
Coloring options: