J4_9SPF_011
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 9SPF|1|L5|UY1|3818
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|C|3696
9SPF|1|L5|U|3697
9SPF|1|L5|G|3698
*
9SPF|1|L5|C|3752
9SPF|1|L5|G|3753
*
9SPF|1|L5|C|3771
9SPF|1|L5|U|3772
9SPF|1|L5|U|3773
9SPF|1|L5|A|3774
9SPF|1|L5|A|3775
9SPF|1|L5|G|3776
9SPF|1|L5|G|3777
9SPF|1|L5|U|3778
9SPF|1|L5|A|3779
9SPF|1|L5|G|3780
*
9SPF|1|L5|U|3814
9SPF|1|L5|G|3815
9SPF|1|L5|A|3816
9SPF|1|L5|A|3817
9SPF|1|L5|UY1|3818
9SPF|1|L5|G|3819
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain Ln
- 60S ribosomal protein L41
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: