J4_9SPF_016
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9SPF|1|S2|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|S2|C|98
9SPF|1|S2|A2M|99
9SPF|1|S2|U|100
9SPF|1|S2|U|101
9SPF|1|S2|A|102
9SPF|1|S2|A|103
9SPF|1|S2|A|104
9SPF|1|S2|PSU|105
9SPF|1|S2|C|106
*
9SPF|1|S2|G|355
9SPF|1|S2|C|356
9SPF|1|S2|C|357
*
9SPF|1|S2|G|405
9SPF|1|S2|PSU|406
9SPF|1|S2|G|407
9SPF|1|S2|A|408
9SPF|1|S2|C|409
*
9SPF|1|S2|G|431
9SPF|1|S2|G|432
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: