J4_9SPI_009

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|G|3634
9SPI|1|L5|A|3635
9SPI|1|L5|C|3636
9SPI|1|L5|PSU|3637
9SPI|1|L5|G|3638
*
9SPI|1|L5|C|3650
9SPI|1|L5|A|3651
9SPI|1|L5|A|3652
9SPI|1|L5|A|3653
9SPI|1|L5|G|3654
*
9SPI|1|L5|U|3690
9SPI|1|L5|G|3691
9SPI|1|L5|A|3692
9SPI|1|L5|U|3693
9SPI|1|L5|U|3694
*
9SPI|1|L5|A|3821
9SPI|1|L5|U|3822
9SPI|1|L5|G|3823
9SPI|1|L5|A|3824
9SPI|1|L5|A2M|3825
9SPI|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA