J4_9SPI_012
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 9SPI|1|L5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|L5|C|4231
9SPI|1|L5|U|4232
9SPI|1|L5|A|4233
9SPI|1|L5|A|4234
9SPI|1|L5|G|4235
*
9SPI|1|L5|U|4289
9SPI|1|L5|U|4290
9SPI|1|L5|G|4291
9SPI|1|L5|A|4292
9SPI|1|L5|PSU|4293
*
9SPI|1|L5|A|4317
9SPI|1|L5|C|4318
9SPI|1|L5|C|4319
*
9SPI|1|L5|G|4328
9SPI|1|L5|G|4329
9SPI|1|L5|G|4330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42
- Chain Pt
- Transfer RNA; tRNA
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