J4_9SRA_005

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AC*GC*GG*UU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SRA_005 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.4368

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9SRA|1|1|A|1722
9SRA|1|1|C|1723
*
9SRA|1|1|G|1739
9SRA|1|1|C|1740
*
9SRA|1|1|G|1797
9SRA|1|1|G|1798
*
9SRA|1|1|U|1816
9SRA|1|1|U|1817

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain Bd

Large ribosomal subunit protein eL34