J4_9SRC_007
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUG*C(OMG)*CUUAAGGU(A2M)G*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9SRC|1|1|U|2212
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SRC_007 not in the Motif Atlas
- Homologous match to J4_4V9F_008
- Geometric discrepancy: 0.4959
- The information below is about J4_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SRC|1|1|C|2089
9SRC|1|1|U|2090
9SRC|1|1|G|2091
*
9SRC|1|1|C|2146
9SRC|1|1|OMG|2147
*
9SRC|1|1|C|2165
9SRC|1|1|U|2166
9SRC|1|1|U|2167
9SRC|1|1|A|2168
9SRC|1|1|A|2169
9SRC|1|1|G|2170
9SRC|1|1|G|2171
9SRC|1|1|U|2172
9SRC|1|1|A2M|2173
9SRC|1|1|G|2174
*
9SRC|1|1|U|2208
9SRC|1|1|G|2209
9SRC|1|1|A|2210
9SRC|1|1|A|2211
9SRC|1|1|U|2212
9SRC|1|1|G|2213
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- Small ribosomal subunit protein eS32
- Chain BB
- Large ribosomal subunit protein uL2
- Chain H
- Dehydrogenase
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