J4_9SRO_001

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9SRO|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SRO_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5692

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9SRO|1|A|G|115
9SRO|1|A|A|116
9SRO|1|A|G|117
9SRO|1|A|U|118
9SRO|1|A|A|119
9SRO|1|A|A|120
9SRO|1|A|U|121
9SRO|1|A|G|122
*
9SRO|1|A|U|239
9SRO|1|A|G|240
*
9SRO|1|A|C|286
9SRO|1|A|U|287
9SRO|1|A|A|288
9SRO|1|A|G|289
*
9SRO|1|A|C|311
9SRO|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17