J4_9SRO_009

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9SRO|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRO|1|a|C|601
9SRO|1|a|A|602
9SRO|1|a|A|603
9SRO|1|a|G|604
*
9SRO|1|a|C|624
9SRO|1|a|G|625
9SRO|1|a|A|626
9SRO|1|a|A|627
9SRO|1|a|G|628
*
9SRO|1|a|C|635
9SRO|1|a|G|636
9SRO|1|a|A|637
9SRO|1|a|G|638
*
9SRO|1|a|C|650
9SRO|1|a|G|651
9SRO|1|a|U|652
9SRO|1|a|U|653
9SRO|1|a|A|654
9SRO|1|a|A|655
9SRO|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15