J4_9SRO_014

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SRO_014 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0648

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9SRO|1|a|A|1772
9SRO|1|a|A|1773
9SRO|1|a|C|1774
9SRO|1|a|U|1775
9SRO|1|a|G|1776
*
9SRO|1|a|C|1788
9SRO|1|a|A|1789
9SRO|1|a|C|1790
9SRO|1|a|A|1791
9SRO|1|a|G|1792
*
9SRO|1|a|U|1827
9SRO|1|a|G|1828
9SRO|1|a|A|1829
9SRO|1|a|C|1830
*
9SRO|1|a|G|1975
9SRO|1|a|U|1976
9SRO|1|a|A|1977
9SRO|1|a|A|1978
9SRO|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2