J4_9SS0_001

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9SS0|1|D1|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS0_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5745

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS0|1|D1|G|115
9SS0|1|D1|A|116
9SS0|1|D1|G|117
9SS0|1|D1|U|118
9SS0|1|D1|A|119
9SS0|1|D1|A|120
9SS0|1|D1|U|121
9SS0|1|D1|G|122
*
9SS0|1|D1|U|239
9SS0|1|D1|G|240
*
9SS0|1|D1|C|286
9SS0|1|D1|U|287
9SS0|1|D1|A|288
9SS0|1|D1|G|289
*
9SS0|1|D1|C|311
9SS0|1|D1|C|312

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AP

Small ribosomal subunit protein uS17