J4_9SS1_001

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9SS1|1|D1|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS1_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5821

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS1|1|D1|G|115
9SS1|1|D1|A|116
9SS1|1|D1|G|117
9SS1|1|D1|U|118
9SS1|1|D1|A|119
9SS1|1|D1|A|120
9SS1|1|D1|U|121
9SS1|1|D1|G|122
*
9SS1|1|D1|U|239
9SS1|1|D1|G|240
*
9SS1|1|D1|C|286
9SS1|1|D1|U|287
9SS1|1|D1|A|288
9SS1|1|D1|G|289
*
9SS1|1|D1|C|311
9SS1|1|D1|C|312

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain AO

Small ribosomal subunit protein bS16

Chain AP

Small ribosomal subunit protein uS17