J4_9SS1_002

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9SS1|1|D1|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS1|1|D1|G|142
9SS1|1|D1|A|143
9SS1|1|D1|G|144
*
9SS1|1|D1|C|178
9SS1|1|D1|A|179
9SS1|1|D1|U|180
9SS1|1|D1|A|181
9SS1|1|D1|A|182
9SS1|1|D1|C|183
9SS1|1|D1|G|184
*
9SS1|1|D1|C|193
9SS1|1|D1|C|194
9SS1|1|D1|A|195
9SS1|1|D1|A|196
9SS1|1|D1|A|197
9SS1|1|D1|G|198
*
9SS1|1|D1|U|219
9SS1|1|D1|G|220
9SS1|1|D1|C|221

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20