J4_9SS5_005

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9SS5|1|D2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS5_005 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2376

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9SS5|1|D2|U|1313
9SS5|1|D2|C|1314
*
9SS5|1|D2|G|1338
9SS5|1|D2|G|1339
9SS5|1|D2|U|1340
9SS5|1|D2|G|1341
9SS5|1|D2|A|1342
9SS5|1|D2|G|1343
*
9SS5|1|D2|C|1404
9SS5|1|D2|U|1405
*
9SS5|1|D2|A|1597
9SS5|1|D2|A|1598
9SS5|1|D2|U|1599
9SS5|1|D2|C|1600
9SS5|1|D2|G|1601
9SS5|1|D2|U|1602
9SS5|1|D2|A|1603

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BW

Large ribosomal subunit protein uL23