J4_9SS5_010

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|G|2643
9SS5|1|D2|G|2644
9SS5|1|D2|G|2645
9SS5|1|D2|C|2646
*
9SS5|1|D2|G|2674
9SS5|1|D2|A|2675
9SS5|1|D2|C|2676
*
9SS5|1|D2|G|2731
9SS5|1|D2|G|2732
9SS5|1|D2|A|2733
9SS5|1|D2|A|2734
9SS5|1|D2|G|2735
*
9SS5|1|D2|U|2769
9SS5|1|D2|G|2770
9SS5|1|D2|C|2771

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BM

Large ribosomal subunit protein uL13

Chain BN

Large ribosomal subunit protein uL14