J4_9SS6_002

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9SS6|1|D1|C|183, 9SS6|1|D1|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D1|G|142
9SS6|1|D1|A|143
9SS6|1|D1|G|144
*
9SS6|1|D1|C|178
9SS6|1|D1|A|179
9SS6|1|D1|U|180
9SS6|1|D1|A|181
9SS6|1|D1|A|182
9SS6|1|D1|C|183
9SS6|1|D1|G|184
*
9SS6|1|D1|C|193
9SS6|1|D1|C|194
9SS6|1|D1|A|195
9SS6|1|D1|A|196
9SS6|1|D1|A|197
9SS6|1|D1|G|198
*
9SS6|1|D1|U|219
9SS6|1|D1|G|220
9SS6|1|D1|C|221

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20