J4_9SS6_005

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9SS6|1|D2|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|C|601
9SS6|1|D2|A|602
9SS6|1|D2|A|603
9SS6|1|D2|G|604
*
9SS6|1|D2|C|624
9SS6|1|D2|G|625
9SS6|1|D2|A|626
9SS6|1|D2|A|627
9SS6|1|D2|G|628
*
9SS6|1|D2|C|635
9SS6|1|D2|G|636
9SS6|1|D2|A|637
9SS6|1|D2|G|638
*
9SS6|1|D2|C|650
9SS6|1|D2|G|651
9SS6|1|D2|U|652
9SS6|1|D2|U|653
9SS6|1|D2|A|654
9SS6|1|D2|A|655
9SS6|1|D2|G|656

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B8

Large ribosomal subunit protein bL35

Chain BD

Large ribosomal subunit protein uL4

Chain BO

Large ribosomal subunit protein uL15