J4_9SS6_008

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9SS6|1|D2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS6_008 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2404

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9SS6|1|D2|U|1313
9SS6|1|D2|C|1314
*
9SS6|1|D2|G|1338
9SS6|1|D2|G|1339
9SS6|1|D2|U|1340
9SS6|1|D2|G|1341
9SS6|1|D2|A|1342
9SS6|1|D2|G|1343
*
9SS6|1|D2|C|1404
9SS6|1|D2|U|1405
*
9SS6|1|D2|A|1597
9SS6|1|D2|A|1598
9SS6|1|D2|U|1599
9SS6|1|D2|C|1600
9SS6|1|D2|G|1601
9SS6|1|D2|U|1602
9SS6|1|D2|A|1603

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BW

Large ribosomal subunit protein uL23