J4_9SS6_010
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SS6_010 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.0701
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SS6|1|D2|A|1772
9SS6|1|D2|A|1773
9SS6|1|D2|C|1774
9SS6|1|D2|U|1775
9SS6|1|D2|G|1776
*
9SS6|1|D2|C|1788
9SS6|1|D2|A|1789
9SS6|1|D2|C|1790
9SS6|1|D2|A|1791
9SS6|1|D2|G|1792
*
9SS6|1|D2|U|1827
9SS6|1|D2|G|1828
9SS6|1|D2|A|1829
9SS6|1|D2|C|1830
*
9SS6|1|D2|G|1975
9SS6|1|D2|U|1976
9SS6|1|D2|A|1977
9SS6|1|D2|A|1978
9SS6|1|D2|U|1979
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
Coloring options: