J4_9SUM_001

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAG

Length

19 nucleotides

Bulged bases

9SUM|1|A|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9SUM|1|A|U|110
9SUM|1|A|C|111
*
9SUM|1|A|G|257
9SUM|1|A|A|258
9SUM|1|A|G|259
9SUM|1|A|U|260
9SUM|1|A|C|261
9SUM|1|A|G|262
*
9SUM|1|A|C|283
9SUM|1|A|U|284
9SUM|1|A|A|285
9SUM|1|A|A|286
9SUM|1|A|G|287
9SUM|1|A|U|288
9SUM|1|A|G|289
*
9SUM|1|A|U|306
9SUM|1|A|A|307
9SUM|1|A|A|308
9SUM|1|A|G|309

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13

Chain P

Ribosomal protein L15

Chain j

60S ribosomal protein L35

Chain k

60S ribosomal protein L36